A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
This report has been generated by the nf-core/epitopeprediction analysis pipeline. For information about how to interpret these results, please see the documentation.
Report
generated on 2021-12-21, 12:41
based on data in:
/tmp/nxf.s06fJo6poY
nf-core/epitopeprediction Software Versions
are collected at run time from the software output.
| Process Name | Software | Version |
|---|---|---|
| CSVTK_CONCAT | csvtk | 0.23.0 |
| CSVTK_SPLIT | csvtk | 0.23.0 |
| CUSTOM_DUMPSOFTWAREVERSIONS | python | 3.9.5 |
| yaml | 5.4.1 | |
| FRED2_GENERATEPEPTIDES | fred2 | 2.0.7 |
| python | 2.7.15 | |
| MERGE_JSON_MULTI | python | 3.8.3 |
| MERGE_JSON_SINGLE | python | 3.8.3 |
| PEPTIDE_PREDICTION_PEP | fred2 | 2.0.7 |
| mhcflurry | 1.4.3 | |
| mhcnuggets | 2.3.2 | |
| pandas | 0.24.2 | |
| python | 2.7.15 | |
| pyvcf | 0.6.8 | |
| PEPTIDE_PREDICTION_PROTEIN | fred2 | 2.0.7 |
| mhcflurry | 1.4.3 | |
| mhcnuggets | 2.3.2 | |
| pandas | 0.24.2 | |
| python | 2.7.15 | |
| pyvcf | 0.6.8 | |
| PEPTIDE_PREDICTION_VAR | fred2 | 2.0.7 |
| mhcflurry | 1.4.3 | |
| mhcnuggets | 2.3.2 | |
| pandas | 0.24.2 | |
| python | 2.7.15 | |
| pyvcf | 0.6.8 | |
| SAMPLESHEET_CHECK | python | 3.8.3 |
| SPLIT_PEPTIDES | NFCORE_EPITOPEPREDICTION:EPITOPEPREDICTION:SNPSIFT_SPLIT | {'snpsift': ''} |
| python | 3.8.3 | |
| SPLIT_PEPTIDES_PROTEIN | python | 3.8.3 |
| Workflow | Nextflow | 21.10.3 |
| nf-core/epitopeprediction | 2.0.0 |
nf-core/epitopeprediction Workflow Summary
- this information is collected when the pipeline is started.
Core Nextflow options
- revision
- 2.0.0
- runName
- sleepy_legentil
- launchDir
- /
- workDir
- /nf-core-awsmegatests/work/epitopeprediction/work-1afbbf19ed6adca477451a3c42e2e0ac0c75af28
- projectDir
- /.nextflow/assets/nf-core/epitopeprediction
- userName
- root
- profile
- test_full,aws_tower
- configFiles
- /.nextflow/assets/nf-core/epitopeprediction/nextflow.config, /nextflow.config
Input/output options
- input
- https://raw.githubusercontent.com/nf-core/test-datasets/epitopeprediction/testdata/sample_sheets/sample_sheet_full_test.csv
- outdir
- s3://nf-core-awsmegatests/epitopeprediction/results-1afbbf19ed6adca477451a3c42e2e0ac0c75af28
Reference genome options
- igenomes_ignore
- true
External software
- netmhcpan_path
- N/A
- netmhc_path
- N/A
- netmhciipan_path
- N/A
- netmhcii_path
- N/A
Institutional config options
- config_profile_name
- Full test profile
- config_profile_description
- Full test dataset to check pipeline function
- config_profile_contact
- Gisela Gabernet (@ggabernet)
- config_profile_url
- https://aws.amazon.com/batch/
Max job request options
- max_memory
- 128 GB
- max_time
- 10d